PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma265g00260.1
Common NameZOSMA_265G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 198aa    MW: 22511.7 Da    PI: 9.4954
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma265g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.6e-322377155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      k+rlrWt+eLHe Fv+av+qLGG+++AtPk il +m v+gLtl+h+kSHLQkYRl
  Zosma265g00260.1 23 KQRLRWTSELHELFVNAVSQLGGPDRATPKGILTAMAVPGLTLYHIKSHLQKYRL 77
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-182078IPR009057Homeodomain-like
PROSITE profilePS5129412.4712080IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-302178IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-252377IPR006447Myb domain, plants
PfamPF002494.7E-82576IPR001005SANT/Myb domain
PfamPF143791.4E-15110149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYRTKNTSTL TLFGVSSPTT ATKQRLRWTS ELHELFVNAV SQLGGPDRAT PKGILTAMAV  60
PGLTLYHIKS HLQKYRLSIC LPVYQATDNS KIERKDNIDN ITNMDSASLD KTLELQIEVQ  120
KRFDEQLEIQ RQLQLRIGAQ VRYLQEITED LPLVFEDKQK KQSENDNYPV KKVKKPRIGD  180
QAALFLSANK LDSYVTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-212376255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161DKQKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904694.12e-54myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW03e-48PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0K9PH221e-143A0A0K9PH22_ZOSMR; MYB transcription factor
STRINGXP_008788479.12e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-39G2-like family protein