PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma266g00010.1
Common NameZOSMA_266G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 260aa    MW: 28922.3 Da    PI: 8.1104
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma266g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.48.1e-07182255372
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                       Y  Y +++GFsvr  +++++    + +++  +r++ Cskeg  +  +  +  +rr++a++ +g  a++k+k+e 
  Zosma266g00010.1 182 YYGYVSKIGFSVRLGSTNYRtskdDGKKNLGMRRLLCSKEGIVDLLHPPKLGKRRKNAVSSCGFCASIKIKREA 255
                       889**********9876555453334456789***********9999888999**********99*****9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSQNSLNVID QSSPLPQPNI DPQNTIHFSH NSSSIYITPP PYRPLHAQPL ISPKEHPRPQ  60
CNVSLDFYSI KTEKPSDCNP NETLENFQCS RINDFPLIPN ANYVPYQYHD TPLDNLQTPI  120
SSENNDVTGL LNANNSSDNA SPNFFVPKQP TYTNSSSDNV KSNSPPIFGQ IYSSYSDALD  180
QYYGYVSKIG FSVRLGSTNY RTSKDDGKKN LGMRRLLCSK EGIVDLLHPP KLGKRRKNAV  240
SSCGFCASIK IKREAMSEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235PKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEI50.0A0A0K9PEI5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494