PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma267g00300.1
Common NameZOSMA_267G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 256aa    MW: 28965.3 Da    PI: 5.2306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma267g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+ +Ed  l+  ++++G ++W++ ++  g+ R++k+c++rw++yl
  Zosma267g00300.1 17 KGPWSLDEDNFLISHIQKYGHKNWRALPKLAGLQRCGKSCRLRWNNYL 64
                      79*********************************************7 PP
2Myb_DNA-binding44.24.5e-1470114147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T eE+e++++ ++++G++ W++Ia++++ gRt++++k+ w++ 
  Zosma267g00300.1  70 RGNYTLEEEEIIIKSHELMGNK-WSAIAAKLP-GRTDNEIKNIWHTN 114
                       899*******************.*********.*********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4341264IPR017930Myb domain
SuperFamilySSF466892.09E-2914111IPR009057Homeodomain-like
SMARTSM007171.8E-121666IPR001005SANT/Myb domain
PfamPF002491.1E-141764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221871IPR009057Homeodomain-like
CDDcd001672.25E-101964No hitNo description
PROSITE profilePS5129422.25365119IPR017930Myb domain
SMARTSM007173.1E-1369117IPR001005SANT/Myb domain
PfamPF002491.5E-1270114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2472119IPR009057Homeodomain-like
CDDcd001673.16E-972115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTRSPGSSRT TRTGLKKGPW SLDEDNFLIS HIQKYGHKNW RALPKLAGLQ RCGKSCRLRW  60
NNYLSPDIKR GNYTLEEEEI IIKSHELMGN KWSAIAAKLP GRTDNEIKNI WHTNLKKKIH  120
GGPNSEKKKV SSIHQLNNNI TEEKEEGLDN KCKVEQSCPS PETTTEVSTA STYDLEEDEL  180
TLFEMPIIDE SFWSVNETDD NEKITTVDHS IMDSDGAFAG SFPEDSIMDF WLKIFLDSTN  240
GINDFDGAQV HQLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-301511925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027938414.13e-69transcription factor MYB15-like
TrEMBLA0A0K9PGW60.0A0A0K9PGW6_ZOSMR; Myb domain protein 15
STRINGGLYMA20G35180.11e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-59myb domain protein 14