PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma267g00390.1
Common NameZOSMA_267G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 229aa    MW: 26221.6 Da    PI: 7.0014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma267g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.11e-24107166258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+W+KYGqK++ g+++p++Y+rCt++   +C ++k+v+ s+ d++v+++tY geH +
  Zosma267g00390.1 107 EDGYHWKKYGQKNILGTKHPKGYFRCTYSqsrQCLATKHVQMSDGDQTVFDVTYFGEHSC 166
                       8**************************998899*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.013101165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-23103166IPR003657WRKY domain
SuperFamilySSF1182901.05E-22105166IPR003657WRKY domain
SMARTSM007744.4E-33106168IPR003657WRKY domain
PfamPF031064.6E-23107166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENHLIAEIN NSRAFVKKLQ PLLDQQDLHC LDISSIKSLV NSLTASIENT MTHAQFAIFQ  60
GEQIKPEDTP RVQNRRSKKR IRRSKEKFTR HVKMTVNLAK GLAESLEDGY HWKKYGQKNI  120
LGTKHPKGYF RCTYSQSRQC LATKHVQMSD GDQTVFDVTY FGEHSCFPGE SKNKETVPPD  180
HDVITENASL SFLDTSVLSL PDMSELFCQD YLTLENEFSF DDVNYYLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17102166468OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17482RRSKKRIRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGX01e-172A0A0K9PGX0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-24WRKY family protein