PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma268g00070.1
Common NameZOSMA_268G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family DBB
Protein Properties Length: 209aa    MW: 22660.8 Da    PI: 4.6522
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma268g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-07447542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ +++ e+++ C  ++  lC +C   +H        H++vpl
  Zosma268g00070.1  4 QCDVCKRGEATILCCADEAALCSNCDADIHAAnklaarHQRVPL 47
                      7******88*********************66899999999986 PP
2zf-B_box27.28.3e-095288337
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                       ++C+ ++ek   +fC +++  lC++C +  H    H
  Zosma268g00070.1 52 IPTCDICQEKSGYFFCLEDRAILCRQCDVGVHTAtpH 88
                      689***************************9955662 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
SMARTSM003363.5E-9147IPR000315B-box-type zinc finger
CDDcd000212.83E-6347No hitNo description
SMARTSM003363.9E-105097IPR000315B-box-type zinc finger
PROSITE profilePS501198.8165097IPR000315B-box-type zinc finger
PfamPF006431.4E-75391IPR000315B-box-type zinc finger
CDDcd000216.91E-85597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKVQCDVCKR GEATILCCAD EAALCSNCDA DIHAANKLAA RHQRVPLYRS SIPTCDICQE  60
KSGYFFCLED RAILCRQCDV GVHTATPHVS DHHRFLVTGV RVGLEQCTAT VVSDNNCRGS  120
SNFVHNNNSS SNIDVITTNT INSNGENDNG KGNGDNPSSS EVVSATSLNP EIRVEGQWQW  180
SDILSSSEFE QCYEGFSDFG FSSVADDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEE21e-152A0A0K9PEE2_ZOSMR; Putative salt tolerance-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-53light-regulated zinc finger protein 1