PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma26g00320.1

Common Name

ZOSMA_26G00320

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 210aa MW: 23748.3 Da PI: 8.4688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma26g00320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.3	7e-15	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++ +++GFsv+ ++++ + ++ +++++ Csk+g+++ t+ +rr++ ++r+gC ++k k+ + ++kw+ ++++l+HnH+++ Zosma26g00320.1 6 YYDFTSSTGFSVCLGSTQNIldkeTVQKILVMKRLLCSKQGSPNLILPPTNGTRRKNGVSRCGCLTNIKFKRIDrSDKWVTDSVNLDHNHPFT 98 8899*******9998776554466677889********9999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-12	6	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MVVQSYYDFT SSTGFSVCLG STQNILDKET VQKILVMKRL LCSKQGSPNL ILPPTNGTRR 60 KNGVSRCGCL TNIKFKRIDR SDKWVTDSVN LDHNHPFTTL SKIRYLLINR SISHTSKILL 120 SSLADVNVSV LQQTAYFSNQ LGGPENMGCM TLDINNMVRD DRIDLKNYDV DLIVEDFEMK 180 KLENAQFFYD LVKDDEGRLK HTSFGPILL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PDZ7	1e-152	A0A0K9PDZ7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma26g00320.1