PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma26g00700.1

Common Name

ZOSMA_26G00700

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 181aa MW: 19749.5 Da PI: 8.3728

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma26g00700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.6	2.2e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+Cak+C++ap fp+++p+kfa+vhk+FGasnv k+l++lp +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +l Zosma26g00700.1 6 PCASCKLLRRRCAKECIFAPFFPSDEPHKFAIVHKVFGASNVNKMLQELPIHERADAVSSLVYEANARVRDPVYGCVGAISYLQNQISQLQMQL 99 7******************************************************************************************* PP DUF260 95 allkee 100 a++++e Zosma26g00700.1 100 AVAQAE 105 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.54	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKE CIFAPFFPSD EPHKFAIVHK VFGASNVNKM LQELPIHERA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QISQLQMQLA VAQAEILCIQ MQQESPRPYT 120 SSGSNTTGGI ITANTNNSQK DGSKSFFITN NLTGLPQFIN FSSSANVTQE TLLKRESLWA 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983069.1	9e-90	PREDICTED: LOB domain-containing protein 12
Refseq	XP_017983070.1	9e-90	PREDICTED: LOB domain-containing protein 12
Refseq	XP_017983071.1	9e-90	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9PED7	1e-132	A0A0K9PED7_ZOSMR; LOB domain-containing protein 4
STRING	EOY34594	3e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-74	LBD family protein

Link Out ? help Back to Top
Phytozome	Zosma26g00700.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]