PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma270g00030.1

Common Name

ZOSMA_270G00030

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB_related

Protein Properties

Length: 244aa MW: 27362.5 Da PI: 6.838

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma270g00030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	26	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++ lG++ W+ Ia++m+ gRt++++k++w+++l Zosma270g00030.1 26 RGNFSEEEQKLIIQLHSSLGNK-WSIIASHMN-GRTDNEIKNYWNTHL 71 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.379	1	20	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.3E-22	6	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-11	6	33	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.157	21	75	IPR017930	Myb domain
SMART	SM00717	3.7E-17	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	26	71	IPR001005	SANT/Myb domain
CDD	cd00167	2.75E-13	28	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-22	34	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSSGLKRCGK SCRLRWCNYL RPDIKRGNFS EEEQKLIIQL HSSLGNKWSI IASHMNGRTD 60 NEIKNYWNTH LKKKLFQLGI DPVTHQLRSD LTLMASVSNL LGFANTNSTT IGMSDHVHHT 120 DHRATQLAKI QLIHSFIRMV ATTEITHSNF TCNLPKQSAL LHENNNPGTG VLIDTNHHSG 180 QPDFPESSLT ISQSPNASNN NQGKEPCDVS INTNTSNSDS EDWEGLMMNL DDLDVDYYWN 240 SIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-19	7	75	40	108	B-MYB
1mse_C	8e-19	7	75	37	105	C-Myb DNA-Binding Domain
1msf_C	8e-19	7	75	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817165.1	4e-55	PREDICTED: transcription factor WER-like
TrEMBL	A0A0K9PG75	0.0	A0A0K9PG75_ZOSMR; Uncharacterized protein
STRING	Aquca_005_00496.1	2e-55	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6265	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-54	myb domain protein 9

Link Out ? help Back to Top
Phytozome	Zosma270g00030.1