PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma270g00050.1
Common NameZOSMA_270G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 161aa    MW: 17957.1 Da    PI: 10.0378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma270g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.88.6e-1437126190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY +YA ++GFsv+ks+++++  ++ it+rt+vCsk+ k++    +   ++k++r+  +  tg kak++   + d+ w v+ + +  nH l+
  Zosma270g00050.1  37 NFYYRYAGHTGFSVCKSTTSSN--TDGITRRTLVCSKNRKSNAIIPSsttSSKKKRNIRNPGTGYKAKITFFVK-DDIWFVSICITSYNHLLS 126
                       6***************987766..555***********999864433333677788888899*********999.9**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1237126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDSSTQGNID LDLQQSITSN DHPSTDMSFN TLEDAENFYY RYAGHTGFSV CKSTTSSNTD  60
GITRRTLVCS KNRKSNAIIP SSTTSSKKKR NIRNPGTGYK AKITFFVKDD IWFVSICITS  120
YNHLLSTPSK RRFLPTNRKI TPHTKNIIHE LEASNVAPSQ *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PDU91e-114A0A0K9PDU9_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-08FAR1-related sequence 5