PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma276g00040.1

Common Name

ZOSMA_276G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 140aa MW: 16426.6 Da PI: 9.5294

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma276g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.6	3.6e-09	35	109	2	75
trihelix 2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L +e+ ++r +++ ++ ++W +++++ + + r++ qC kw++l ++ ik++e++ + ++ Zosma276g00040.1 35 WSLHEMLTLvLEINVVYDKRGSSTISAHQKWNIIGDHLIALNICRNSSQCHRKWDSLISEHYTIKDWESRSRYQT 109 8888888774799999999999999*******************************************9975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-6	34	106	No hit	No description
PROSITE profile	PS50090	6.017	35	92	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MFRHKWSFSL GKFSTIKISD TLMSRFTRSH IIPDWSLHEM LTLVLEINVV YDKRGSSTIS 60 AHQKWNIIGD HLIALNICRN SSQCHRKWDS LISEHYTIKD WESRSRYQTA STSRSNGGDS 120 YWCLESDKRK DLKLRIEFD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PG37	5e-97	A0A0K9PG37_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-24	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma276g00040.1