PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma278g00240.1
Common NameZOSMA_278G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 878aa    MW: 97233.2 Da    PI: 7.8495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma278g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18401501199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++  ++ ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +
  Zosma278g00240.1 401 FEKMLSASDAGRIGRLVLPKKCAEAYfpSIYQPEGLPLKVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRID-PD 491
                       89**************************444556678***************9989999999***9.********************987.88 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                       ++lv++++++
  Zosma278g00240.1 492 GKLVMGFRKA 501
                       8888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-30397505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19398500IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-22399500No hitNo description
SMARTSM010196.4E-20401502IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18401502IPR003340B3 DNA binding domain
PfamPF023626.6E-16401501IPR003340B3 DNA binding domain
PROSITE profilePS5105012.52630680IPR011124Zinc finger, CW-type
PfamPF074961.4E-9635677IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MTSPPISAAV TDLVAGVGSG GGRICFNTHC KEPKSEGFST RRKGWRLRSG ELADLCDCCS  60
NSYEQGTFCE TFHLDEDGWK KCASCAKRVH CGCIVSATSF ALLDAGGVEC ISCAQKNFLL  120
GSNQMWSSPN FLSSERLKEL PSKSWSQLSA STAVPGQWRQ APSAWRSAVS SQSEIHQRLS  180
FEFDRPSNRP LVSEKRKVDD LHERPVPTVP NRITIDRHAS GSTGPKPSGF STFHRDDVIV  240
NADRLQESSL LVGDSDHMPT RKGVIQSSRL SSSVGIKIEK VPNACSIAPH RPPLSKDGSK  300
SPVIGLTTPL LPSLEPNDQI RVSTNHLHNK TSSSSMTKQL YPNLNSTNDS INESQAQLRN  360
GRTRVDSRTR NHLLPRYWPR ITDQELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK  420
KCAEAYFPSI YQPEGLPLKV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG  480
DIVTFSRIDP DGKLVMGFRK ASNTQNEQAP KSGNGFSSTS EIGNGNNKQD RTILSKNDKV  540
EFIKKERPVS KGQLVPSKRK NSTVVSKSKR LLIENEESIE LKLTWEEAQD LLRPAPNHVP  600
SIVVIEGHEF EEYEEAPVLG KPTIFTTNED GGKDQWAQCE DCLKWRKLPL DAPLAPRWTC  660
LDNIWDPDRS SCLSAQEISK GLAADFVPFN NANSKKRQVK VESVEGSEGL DTLANLAIMS  720
ESESVPQSSQ ATTKHPRHRP GCSCIVCIQP PSGKGSKHKQ SCACNVCLTV KRRFHTLMLR  780
KEKRLSEKEA ETSRKKHLKQ QNVSPETSSQ QESDKGGVGE QNMDNNSTPN DAEGEEEEDS  840
DTKKEVMLSQ MKTEIDLNMQ PEKEEENNNN TSVIPTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-643795092132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1770783KRRFHTLMLRKEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905576.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0K9PDM40.0A0A0K9PDM4_ZOSMR; B3 domain-containing protein
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-157high-level expression of sugar-inducible gene 2