PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g00340.1
Common NameZOSMA_27G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 250aa    MW: 28997.5 Da    PI: 4.8958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-1957150292
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      +k+l +sdv+++gr++lpkk ae+h   +  +e+++l + d e+ + W++k+++  +++s++yvl+ ++ +Fvka++L+ gDf++++  ++ + 
  Zosma27g00340.1  57 QKELRNSDVGSLGRMILPKKEAEAHlpALTAREGMMLCMDDmETLQPWTFKYRFwpNNRSRMYVLE-NTGDFVKAHRLQLGDFIMLYK-DDCRD 148
                      7999***********************99999*********7777*******99888888889999.*******************93.33555 PP

                      .. CS
               B3  91 el 92 
                      ++
  Zosma27g00340.1 149 RY 150
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.08E-2254156No hitNo description
Gene3DG3DSA:2.40.330.102.0E-2654156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2055152IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.61456158IPR003340B3 DNA binding domain
SMARTSM010192.6E-1356158IPR003340B3 DNA binding domain
PfamPF023622.8E-1557152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDGEDGSSSF PFPQIGFHGE IRRRKRSARQ RRVFQTNSEE FPRSESKLVY PFRFLLQKEL  60
RNSDVGSLGR MILPKKEAEA HLPALTAREG MMLCMDDMET LQPWTFKYRF WPNNRSRMYV  120
LENTGDFVKA HRLQLGDFIM LYKDDCRDRY IIHGRKIGAP VAAAAADEEE ATEEEEATRP  180
LEAAETEETA SFCRDMYHPW AGYDDNMQHD AAYSLDFSFF FSNDIIDNRR VLKSFPSLDS  240
IENLSLDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-47531712112B3 domain-containing transcription factor FUS3
6j9b_D2e-47531712112B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020243040.13e-58B3 domain-containing protein LFL1-like
TrEMBLA0A0K9PFF60.0A0A0K9PFF6_ZOSMR; B3 domain-containing transcription factor ABI3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.19e-47B3 family protein