PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g00400.1
Common NameZOSMA_27G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 227aa    MW: 26470.5 Da    PI: 10.3962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16131220198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +t+s+v+   +l+lpk+f +++  k  ++  ltl de+g++++  +   k++    l++GW++F  +++L +gD ++F+l++ ++f  ++
  Zosma27g00400.1 131 FVKPMTQSHVTGGFWLSLPKSFSSTYLPK--SNEYLTLIDEDGNEFQSLYLAPKNG----LSGGWRGFSMEHDLVDGDALIFELINPKTF--KI 216
                      89*********************999433..4457***************555555....9***********************987877..66 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Zosma27g00400.1 217 YIIR 220
                      6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-18127220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-22128220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-22129220No hitNo description
PfamPF023625.3E-14131220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914131222IPR003340B3 DNA binding domain
SMARTSM010194.0E-19131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MADYEKLRQK KLEENKRKID ELKLNQLSVS LTRSVLKPSP NKQFKRRLVN QRPKLVSLRR  60
SNRLANLTEP VTYKEDPLYY FLENPRRRMR SGTSTRKDLL KRVYASNESR ALTENMAIKF  120
MEEKESIFPS FVKPMTQSHV TGGFWLSLPK SFSSTYLPKS NEYLTLIDED GNEFQSLYLA  180
PKNGLSGGWR GFSMEHDLVD GDALIFELIN PKTFKIYIIR VRDYSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922411.12e-77B3 domain-containing protein Os06g0194400 isoform X1
RefseqXP_010922412.12e-77B3 domain-containing protein Os06g0194400 isoform X1
SwissprotQ69V362e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0K9PD481e-164A0A0K9PD48_ZOSMR; B3 domain-containing protein
STRINGXP_008788064.13e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]