PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g00470.1
Common NameZOSMA_27G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 241aa    MW: 26888.3 Da    PI: 9.773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.33.2e-45101371127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeelv++yL++kv + +l++ ++i+++++ +++PwdLp ++ +a++k  yfF  r++ky+ g+r+nr + sgyWk tg dk+++
  Zosma27g00470.1  10 LPPGFRFHPTDEELVMQYLRRKVFSYPLPV-SIIPDIHLSRFDPWDLPvAASAASDKGSYFFNLRSTKYRIGNRTNRGAGSGYWKVTGGDKPIK 102
                      79****************************.89***************6566678999*******************99**************9 PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      ++ +++ vg+kk Lvfy+g++p+g++tdWvmhey 
  Zosma27g00470.1 103 ASaDRRIVGVKKFLVFYRGKSPHGVRTDWVMHEYY 137
                      9878889***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-546168IPR003441NAC domain
PROSITE profilePS5100552.76110168IPR003441NAC domain
PfamPF023652.0E-2311136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDKAGVLVRL PPGFRFHPTD EELVMQYLRR KVFSYPLPVS IIPDIHLSRF DPWDLPVAAS  60
AASDKGSYFF NLRSTKYRIG NRTNRGAGSG YWKVTGGDKP IKASADRRIV GVKKFLVFYR  120
GKSPHGVRTD WVMHEYYYLP ATSGHIPSQG NSNTSYIGDW VLCHVFQKKR AHRRGSVVES  180
SDTQTGARFI DFMGTMNSND INTIDSLPDS SCVTQLSAGD DEACCSSVSS HIRSSEQRRV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4741699169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421046.11e-75PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY932e-59NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0K9PFK21e-179A0A0K9PFK2_ZOSMR; NAC domain protein
STRINGGSMUA_Achr10P11910_0015e-75(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-61NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]