PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma27g00610.1

Common Name

ZOSMA_27G00610

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TCP

Protein Properties

Length: 225aa MW: 24269.6 Da PI: 5.1166

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma27g00610.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.9	6.1e-37	52	136	3	86
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnss 86 +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++ +i+++tg+++ +as++ +++ s++++ + Zosma27g00610.1 52 PKRRSTKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSESSIIAATGSGTVPASSFsvtSSGPISNQVQ--N 136 799************************************************************888886554332222222222..1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-30	56	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.272	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDDLEVPNFH HHGMETESET QDETPGEEQE IGEGGGRELV LNKERQQQQL VPKRRSTKDR 60 HKKVDGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQSESSIIA ATGSGTVPAS 120 SFSVTSSGPI SNQVQNVSVS SAVESRNGWS SEMWNAFENQ GSGFGHMSIA SMMSGGLPGL 180 ELGLSQDIGI SNPLGFDHYN QQQIGRGSDS GGGDEVGGVN HHEM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006844624.1	9e-51	transcription factor TCP20
Refseq	XP_011623455.1	9e-51	transcription factor TCP20
Refseq	XP_020693581.1	8e-51	transcription factor TCP20
Swissprot	Q9LSD5	4e-43	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A0K9PDF8	1e-162	A0A0K9PDF8_ZOSMR; TCP transcription factor 18
STRING	ERN06299	3e-50	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-40	TCP family protein

Link Out ? help Back to Top
Phytozome	Zosma27g00610.1

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]