PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma280g00080.1
Common NameZOSMA_280G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 406aa    MW: 47507.7 Da    PI: 8.4237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma280g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05100122123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C  C+ +F+ + +L++H++ H
  Zosma280g00080.1 100 YACVECSAVFNKPAYLQQHMQGH 122
                       89******************988 PP
2zf-C2H215.26.1e-05128152123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp  dC+ s++rk++L rH  +H
  Zosma280g00080.1 128 FSCPldDCHHSYRRKDHLSRHVLSH 152
                       89*******************9998 PP
3zf-C2H212.50.00046157182123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       +kC+  +C++ F  + n+krHi   H
  Zosma280g00080.1 157 FKCSvkNCNQQFAFQTNMKRHIDEfH 182
                       89********************8877 PP
4zf-C2H214.50.0001199223123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+   C k+F+  s Lk+H ++H
  Zosma280g00080.1 199 HTCSesGCRKTFKYLSKLKKHENSH 223
                       789999****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355455275IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-697121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.715100127IPR007087Zinc finger, C2H2
SMARTSM003550.019100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.86E-9108161No hitNo description
Gene3DG3DSA:3.30.160.603.3E-10122154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.723128157IPR007087Zinc finger, C2H2
SMARTSM003550.047128152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-5155183No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5155183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.21157182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93157187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-5195223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.022199223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473199223IPR007087Zinc finger, C2H2
PROSITE patternPS000280201223IPR007087Zinc finger, C2H2
SMARTSM003550.054225250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227250IPR007087Zinc finger, C2H2
SMARTSM0035554253274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18284314IPR007087Zinc finger, C2H2
SMARTSM0035588287309IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-4289314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.84E-7295337No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5315327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.6315341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280317341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEPETSDSDY SELLEDEQEN EGSFEGVTSI SCPSMEQKDS KRDDVKRDIR KYYCEYCGIC  60
RSKKTLITAH VLLNHKEEIQ DKKDNDAKGE NVNGSSERCY ACVECSAVFN KPAYLQQHMQ  120
GHSIERPFSC PLDDCHHSYR RKDHLSRHVL SHKGKLFKCS VKNCNQQFAF QTNMKRHIDE  180
FHSEGEIQLH YDKMHEKLHT CSESGCRKTF KYLSKLKKHE NSHKVICNEA GCMKSFINNK  240
YLKEHMYSCH RFKMCHICGT QQLKKNFKRH KRIHELSSPT TEMLNSTFKD CCHKFSKKSN  300
LNKHIKSVHL NEKPFTCHFT GCEKKFSFKH VRDNHEKSGI HVHVPNDFLV SDEEFRQRER  360
GGRRHQKYPD VATLFQKRVT APCGRTSILD DPGGYLRWLL DDEET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-1410024513155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-1410024513155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931909.11e-136transcription factor IIIA
TrEMBLA0A0K9PDA30.0A0A0K9PDA3_ZOSMR; Putative Zinc finger protein
STRINGXP_008793643.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-89transcription factor IIIA