PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma287g00110.1
Common NameZOSMA_287G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 704aa    MW: 82143.2 Da    PI: 10.0914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma287g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21e-1112101290
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrs 88 
                       fkvl     +k + l+l+ kfa+  ++ +e + +  l de+      r+W+v +  r+++g+++lt +GW++F ++++L+ g f++F + ++ 
  Zosma287g00110.1  12 FKVL--LGDFKDK-LYLSGKFAALPKKWPELKLKTALGDETKkkkkkRVWSVDI--RNSDGMFYLTgDGWRRFIDDHDLRFGYFLIFIYCSDV 99 
                       5555..5555554.888888884333333333333333333366666*******..******776659*******************997765 PP

                       EE CS
                B3  89 ef 90 
                       +f
  Zosma287g00110.1 100 TF 101
                       54 PP
2B333.85.9e-11201296395
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       k +++ ++ ++g+l l+ +f++e+++ +   +   + +++  sW+vk+++       ++s + ++++G  +F ++n+Lk++D+++F+l + +e
  Zosma287g00110.1 201 KCTLRQSSIQKGILNLSTRFCQENNLLS---VNQAVLTTEIGSWTVKICHcprkysFGRSTSSFFSAGITSFFRENNLKTRDVCIFELLSVDE 290
                       6667788899999***********7664...344556667789*****887765554455558899*********************887655 PP

                       E..EEE CS
                B3  90 felvvk 95 
                        + ++ 
  Zosma287g00110.1 291 NRANFC 296
                       545554 PP
3B332.31.8e-103294121496
                       T-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +rl +p +f ++++++     ++tl ++++     W v++++  + +r  +t GW  F ++ g kegD+++F+l ++++ + ++ v
  Zosma287g00110.1 329 NRLNFPTSFRNSNDLSRID--EVTLLTKESigrHHWPVRFRHYLTENRSSFTFGWTTFKRESGFKEGDVCIFELFSKKGNTATFLV 412
                       68999****9999877544..56666655555799*****9966666667999********************9877777666665 PP
4B343.94.3e-144695581398
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvf 97 
                       +  + +p kf  +h ++k +s  +tl+ ++g+sWev++  r ++ +       lt+GWk+F+ +n+LkegD++ +kl+  +  ++ e+vv + 
  Zosma287g00110.1 469 RFEVHVPVKFGLHHLINK-SS--ITLK-RNGKSWEVRVVGRTNGTKtntvyRKLTTGWKRFCFDNELKEGDVCSLKLVsiEAaKNLEMVVDIK 557
                       455689999998886554.54..5544.69********66333333455555689*********************76334456667777665 PP

                       - CS
                B3  98 r 98 
                       r
  Zosma287g00110.1 558 R 558
                       5 PP
5B344.72.4e-146166921790
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                        +p +f + + + + +s ++tl+++ + sWev+++   r++  +  y +++GWkeF+ +n+L+ gD+++F+l+++ + +
  Zosma287g00110.1 616 HIPVSFNAVYYLHN-KS-MVTLTNSVNDSWEVTVTRrlRNGYMSvyYRFSNGWKEFCIENRLENGDICTFELVSEqNAA 692
                       57888877774442.33.8***************6555444444788999*********************99864444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-115109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-146115IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-810107No hitNo description
SMARTSM010191.9E-611109IPR003340B3 DNA binding domain
PfamPF023625.5E-912101IPR003340B3 DNA binding domain
PROSITE profilePS508639.33356109IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-9195290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-10195289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.895199301IPR003340B3 DNA binding domain
SMARTSM010196.3E-8199299IPR003340B3 DNA binding domain
PfamPF023621.6E-7201296IPR003340B3 DNA binding domain
CDDcd100177.79E-6203298No hitNo description
PROSITE profilePS5086310.969316416IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-10317404IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-11319410IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-8319413No hitNo description
SMARTSM010190.0058321416IPR003340B3 DNA binding domain
PfamPF023625.2E-8329412IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-15454555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-12456544IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-6456560IPR003340B3 DNA binding domain
CDDcd100173.49E-12466558No hitNo description
PfamPF023624.7E-12468558IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771489560IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15577700IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533600702IPR003340B3 DNA binding domain
SMARTSM010193.3E-6610702IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-15614688IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-9617686No hitNo description
PfamPF023621.6E-11617692IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVNVEEENLM FFKVLLGDFK DKLYLSGKFA ALPKKWPELK LKTALGDETK KKKKKRVWSV  60
DIRNSDGMFY LTGDGWRRFI DDHDLRFGYF LIFIYCSDVT FYVIPFDLSG FRIAYNGVNK  120
PIGIENNADM DVDEDDVKSK IRVTDNDNRL KLQKIRKQNM KVKNKPQFKK IRRPTRCFEM  180
EKWKKTNEGT RLKDGKNHLL KCTLRQSSIQ KGILNLSTRF CQENNLLSVN QAVLTTEIGS  240
WTVKICHCPR KYSFGRSTSS FFSAGITSFF RENNLKTRDV CIFELLSVDE NRANFCVTKE  300
DGDTLMMAAK EKNTVENRPQ FKIILRPVNR LNFPTSFRNS NDLSRIDEVT LLTKESIGRH  360
HWPVRFRHYL TENRSSFTFG WTTFKRESGF KEGDVCIFEL FSKKGNTATF LVSKEDDFSR  420
EKDTGSRLIR PHFEATEEVE FYRKNDTGSP LIPSHFDVTI KRRYLCSSRF EVHVPVKFGL  480
HHLINKSSIT LKRNGKSWEV RVVGRTNGTK TNTVYRKLTT GWKRFCFDNE LKEGDVCSLK  540
LVSIEAAKNL EMVVDIKRKY PILRRNNAYM EPESSFNRPH FQSTITNTHI FGKISELNVF  600
SCSVSSYLLF FGILQHIPVS FNAVYYLHNK SMVTLTNSVN DSWEVTVTRR LRNGYMSVYY  660
RFSNGWKEFC IENRLENGDI CTFELVSEQN AAKIEMRVTF HKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PCR40.0A0A0K9PCR4_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-11B3 family protein