PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma287g00120.1
Common NameZOSMA_287G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 331aa    MW: 38083.4 Da    PI: 10.1252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma287g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-1111102193
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       ffkvl     +k++ l+l+ kfa+  g+ +e +    l d +      ++W+v+++y ++    + ++GW++Fvk+++L+ g f+vF + ++ 
  Zosma287g00120.1  11 FFKVL--LGDFKKK-LILSEKFAALSGKWPELKLSTALGDNNDgdknkKVWRVEIQYFGGT-FNLTGDGWRSFVKDHDLRFGYFLVFLHCSDV 99 
                       67777..6777776.999999997777666666566666644469999*******665554.467779********************87665 PP

                       EE..E CS
                B3  89 efelv 93 
                       +f  +
  Zosma287g00120.1 100 NF--Y 102
                       55..4 PP
2B331.24e-10177267291
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       fk+ +++ + +++ + +p+ f  ++++ k+  ++  l++    sW+vk++++ +++r      ++ G+ +F +an+Lk+gD+++F+l +++e 
  Zosma287g00120.1 177 FKIIVQPTYIERSEIHFPNLFRVANNLAKT--TEANLTTAI-GSWTVKFRHTHNRKRmikrSAFSLGTFDFLRANNLKQGDVCIFELLSKDEN 266
                       688889999999999999999888887754..467777754.588888888444444356778889********************8765444 PP

                       . CS
                B3  91 e 91 
                       +
  Zosma287g00120.1 267 R 267
                       3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-117107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-138109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-911107No hitNo description
PfamPF023622.4E-811101IPR003340B3 DNA binding domain
SMARTSM010191.2E-511109IPR003340B3 DNA binding domain
PROSITE profilePS508639.38952109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-10173265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-9174264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.487176276IPR003340B3 DNA binding domain
PfamPF023625.5E-8177267IPR003340B3 DNA binding domain
SMARTSM010190.04177269IPR003340B3 DNA binding domain
CDDcd100171.35E-7217273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVNVKEESFV FFKVLLGDFK KKLILSEKFA ALSGKWPELK LSTALGDNND GDKNKKVWRV  60
EIQYFGGTFN LTGDGWRSFV KDHDLRFGYF LVFLHCSDVN FYVVPFDLTG FRIAYAQITT  120
INHLKSKEIM DVDDYDDKLK KQKIEKNPNL AGTPEMEQNK NKMVNEDHLK VANRPQFKII  180
VQPTYIERSE IHFPNLFRVA NNLAKTTEAN LTTAIGSWTV KFRHTHNRKR MIKRSAFSLG  240
TFDFLRANNL KQGDVCIFEL LSKDENRASF LVTKEDNALE KRSLREVANV GVATSTRSDT  300
QASRRFTSTD QVPIQTYQRR NRQINGCNTT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141DKLKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PCZ10.0A0A0K9PCZ1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-10B3 family protein