PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma287g00130.1
Common NameZOSMA_287G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 920aa    MW: 107046 Da    PI: 10.1802
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma287g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.1e-101196190
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                      ffk+l   d +k++ l+l+ k a+  ++ +e +    l d + ++Wev++  r ++g+ y+ ++ W++Fv++++ + g f+vF + ++ +f
  Zosma287g00130.1 11 FFKIL--LDDFKNK-LILSEKVAAMSEKWSELKLRTALGDMKKKVWEVEI--RDSDGMfYLAGDEWRGFVDDHDFQFGYFLVFFYCSDVTF 96
                      88999..9999998.9999999977765555555666667777*******..9999994555689******************98776555 PP
2B334.24.4e-11193284394
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        +++++++ ++++l +p  f+ ++++++ +  ++++ +++  sW+vk+ +   +k++ + +l++G  +F ++n+Lk+gD+++Fkl +++e + 
  Zosma287g00130.1 193 EITIQPSYISKRLLNFPSLFCVANDLISIN--EVQI-STNIGSWTVKFYHsqlKKGGIQNFLSTGLISFFRENNLKQGDVCIFKLLSKHEDRA 282
                       4567888888899***********988544..5664.4566789999855666777777*************************876644444 PP

                       EE CS
                B3  93 vv 94 
                       ++
  Zosma287g00130.1 283 NF 284
                       44 PP
3B343.36.6e-14371457288
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       fk+ +++++ k+g++++p++f +++++++ +  ++ l + +  sW+v++++ r ksg+   ++++GW +F ++n+Lk+gD+++F l++++
  Zosma287g00130.1 371 FKIIIQPSYVKKGIMYFPNHFRDANDLQSIN--EVHLST-TIGSWTVNFCHsRMKSGGlqSFFSAGWASFRSENNLKQGDVCIFDLSSKQ 457
                       68899999999**************888444..677555.6679*****9965566658899***********************98542 PP
4B342.61.1e-13545626486
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                       + +++++ +++ + +p  f +e+g+ ++   +  l+++ g +W+v++++  +s++   ++++GW +F+k+n++k+gD+++Fkl +
  Zosma287g00130.1 545 IIIQPSYISRKKMNFPIAFRDENGLRNTD--EANLTTTIG-RWTVRFCHYPSSNGirSFFAAGWPSFCKENNIKSGDVCIFKLLS 626
                       556777888888***********999655..788777666.6*****996666666699***********************865 PP
5B336.58.4e-126977691386
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       s+ + +p +f ++++++   +++ ++ +++gr W v +++  r +  r ++t GW+ F ++n+Lk+gD+++F+l  
  Zosma287g00130.1 697 SRYMHFPSEFRDSYDLS---GIDEVILNRKGRLWLVSFRHykRTYNLRSFFTLGWETFKRENNLKTGDVCTFELLL 769
                       44578999999999766...456678999*********66544444458899*********************763 PP
6B355.11.4e-17818905190
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+ +l++s+  k++++ +p +f + + g      +++l+++ ++sWev ++    +++    + l+kGWkeF+++n+L+  D++ F+l+++++
  Zosma287g00130.1 818 FEVKLKNSHFVKTNCMHIPVSFGTYFRGR----SKVILTNSLSESWEVGISE--EKRGtcvyHRLSKGWKEFCHDNKLEKDDVCSFELISEEG 904
                       8899*******************555544....27***************54..2222256899************************98744 PP

                       E CS
                B3  90 f 90 
                       +
  Zosma287g00130.1 905 A 905
                       4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-87104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-118110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-611102No hitNo description
PfamPF023622.2E-71196IPR003340B3 DNA binding domain
SMARTSM010199.8E-611104IPR003340B3 DNA binding domain
PROSITE profilePS508639.24845104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-9187287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-11187283IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0038192290IPR003340B3 DNA binding domain
PfamPF023624.1E-9193283IPR003340B3 DNA binding domain
PROSITE profilePS508638.205232292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-13368467IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-11369468IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-6369451No hitNo description
PROSITE profilePS5086311.025370471IPR003340B3 DNA binding domain
PfamPF023623.2E-11371457IPR003340B3 DNA binding domain
SMARTSM010192.4E-5371471IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-13539627IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-15539627IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-9541624No hitNo description
PROSITE profilePS5086310.912542640IPR003340B3 DNA binding domain
SMARTSM010191.6E-11543646IPR003340B3 DNA binding domain
PfamPF023625.7E-11545627IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-14681771IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-13682768IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308685782IPR003340B3 DNA binding domain
CDDcd100174.10E-10686767No hitNo description
SMARTSM010198.5E-5688783IPR003340B3 DNA binding domain
PfamPF023621.2E-9694773IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16814903IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-15815903IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-13816904No hitNo description
PfamPF023626.0E-15818905IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744818914IPR003340B3 DNA binding domain
SMARTSM010191.9E-10818916IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MVDIEEESFV FFKILLDDFK NKLILSEKVA AMSEKWSELK LRTALGDMKK KVWEVEIRDS  60
DGMFYLAGDE WRGFVDDHDF QFGYFLVFFY CSDVTFYVVP FDLSGYRIAY DRPIIDYGHA  120
LVLVDDDDED DDDGSKVVVA QKPTGNEKKR RNLKLQNKPR FKFDLQSSYH QFDTIAGRIK  180
MMKKMTVKKP QFEITIQPSY ISKRLLNFPS LFCVANDLIS INEVQISTNI GSWTVKFYHS  240
QLKKGGIQNF LSTGLISFFR ENNLKQGDVC IFKLLSKHED RANFYVTKEG SKEVEFSRKE  300
DSSNVSRRNI SRKRDDDHIL KMDKKKNTVE NNLKIQKRAQ FKINIKPTNG GNDRLKEQKM  360
TKKMILLKPQ FKIIIQPSYV KKGIMYFPNH FRDANDLQSI NEVHLSTTIG SWTVNFCHSR  420
MKSGGLQSFF SAGWASFRSE NNLKQGDVCI FDLSSKQKNI ANFYVEVSRS GNNSNVFERN  480
IRRKLDDDGN QMCEKKNTAE KNLKVQKRPQ FKKNIKSTNG GDDDGRMRVQ KMRKEMIVKK  540
PQFEIIIQPS YISRKKMNFP IAFRDENGLR NTDEANLTTT IGRWTVRFCH YPSSNGIRSF  600
FAAGWPSFCK ENNIKSGDVC IFKLLSKLDN IANFVVTKQV KFSRMEDNST VPKRNLARKI  660
RNGGEITFDD KPKMDIKIKH KSQKNPRFKI HMQTSYSRYM HFPSEFRDSY DLSGIDEVIL  720
NRKGRLWLVS FRHYKRTYNL RSFFTLGWET FKRENNLKTG DVCTFELLLK KANKAIFLVK  780
KKVIFSRKED NSSDVQSRNA NQPNYATGSR SLASRPHFEV KLKNSHFVKT NCMHIPVSFG  840
TYFRGRSKVI LTNSLSESWE VGISEEKRGT CVYHRLSKGW KEFCHDNKLE KDDVCSFELI  900
SEEGAEKLEL IVTFAIHIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PF540.0A0A0K9PF54_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.16e-18B3 family protein