PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma288g00100.1
Common NameZOSMA_288G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 212aa    MW: 24154.1 Da    PI: 9.6533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma288g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.2e-1288130352
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                        +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ k
  Zosma288g00100.1  88 MRGVYF--KNMKWQAAIKVE-----KKQIHLGTVGSQEEAARLYDRAAFK 130
                       79**98..47*********6.....6*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.05875142IPR001471AP2/ERF domain
PfamPF008474.1E-687131IPR001471AP2/ERF domain
SMARTSM003808.9E-587144IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-888133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-689132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVSLRKRRLL GFLVGTCNSD SQSHDPSNAI ETKQEQAINI SEGDYGSFCL SGSSSSKEGL  60
IQQQPVPEVK KRKRHRRKVV ENREPCNMRG VYFKNMKWQA AIKVEKKQIH LGTVGSQEEA  120
ARLYDRAAFK CGREPNFELS EEEKQELRSF EWDEFLAMTR DAINNKKNQR RISAIKKKKS  180
KTKRPNEEDW GSNPDVKASS DDIDGEETSL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169184RRISAIKKKKSKTKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682753.14e-70PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X3
SwissprotQ56XP94e-44ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0K9PEY91e-155A0A0K9PEY9_ZOSMR; Ethylene-responsive transcription factor-like protein
STRINGGSMUA_Achr6P06510_0011e-67(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.15e-45ERF family protein