PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma289g00200.1

Common Name

ZOSMA_289G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 168aa MW: 18915.8 Da PI: 7.4588

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma289g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.6	2.3e-32	48	102	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 k ++cprCds +tkf y+nny ++qPr++Ck+C+ryWt+GG+ r vPvG++rrk+ Zosma289g00200.1 48 KPIQCPRCDSLDTKFAYFNNYKTNQPRHLCKKCQRYWTEGGSQRSVPVGAARRKS 102 6789*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-19	40	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-28	49	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.549	50	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MNPKSKPILD LPMAKSGEAK MDKELEMEAG REGGTSNNND QASQSNIKPI QCPRCDSLDT 60 KFAYFNNYKT NQPRHLCKKC QRYWTEGGSQ RSVPVGAARR KSLISQRHRP YPYQWNADER 120 YSRLEKTEDI ENNSEHNNKN DGNDSADGAE IVDHSTLHVN CIAAISD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195276.1	3e-26	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195277.1	3e-26	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195278.1	3e-26	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195279.1	3e-26	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195280.1	3e-26	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0K9PCS7	1e-123	A0A0K9PCS7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-27	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Zosma289g00200.1