PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma289g00260.1
Common NameZOSMA_289G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 227aa    MW: 25898.6 Da    PI: 6.9491
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma289g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.6e-302780255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       rlrWt++LH++F++av++LGG+ekAtPk+++ +m+v+gL l+h+kSHLQkYRl
  Zosma289g00260.1 27 RRLRWTKQLHDQFIDAVTHLGGAEKATPKSVMLMMDVPGLNLYHLKSHLQKYRL 80
                      59***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6052383IPR017930Myb domain
TIGRFAMsTIGR015571.2E-202781IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-272783IPR009057Homeodomain-like
SuperFamilySSF466895.91E-142784IPR009057Homeodomain-like
PfamPF002499.4E-62879IPR001005SANT/Myb domain
PfamPF143797.7E-11119151IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQKKIRVVQT SMDGGSNIHP PPDFKLRRLR WTKQLHDQFI DAVTHLGGAE KATPKSVMLM  60
MDVPGLNLYH LKSHLQKYRL GQSREQRLLP DCRKQVANYI KPAEISSLDF RLQLNESMTK  120
MQTEIEVQRH LQLRIEAQAK YLQTVLKKAE ESLAAGTDSV LIDSCLTSLE RKEEDNDDDD  180
GEVEEDNLCK LKIGASCSSI DQSPHPLFIE TQLGKHKFQY ELDLNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114299.14e-42myb-related protein 2-like
RefseqXP_020114307.14e-42myb-related protein 2-like
SwissprotF4I2743e-33PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0K9PEZ01e-167A0A0K9PEZ0_ZOSMR; Myb family transcription factor
STRINGXP_008783889.15e-39(Phoenix dactylifera)
STRINGXP_008802581.15e-39(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.16e-35G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]