PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma289g00420.1
Common NameZOSMA_289G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 443aa    MW: 50935.1 Da    PI: 7.9188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma289g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068200222123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C+ C    +rk++L+rH+r++
  Zosma289g00420.1 200 YFCEFCLNFMKRKEQLQRHMRKC 222
                       78*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.2703.9E-3549127No hitNo description
SuperFamilySSF541602.66E-2249167IPR016197Chromo domain-like
PfamPF117172.0E-1957115IPR025995RNA binding activity-knot of a chromodomain
CDDcd000242.78E-670121No hitNo description
SMARTSM002981.2E-471130IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.30.30.2703.9E-35161211No hitNo description
PROSITE profilePS5172674.215166437IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557291.4E-108167438IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.301.6E-72225368IPR016181Acyl-CoA N-acyltransferase
PfamPF018534.0E-82227404IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00249278336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:0016573Biological Processhistone acetylation
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043995Molecular Functionhistone acetyltransferase activity (H4-K5 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MTVTIKLNAN MGSMEPDSAA EGTAHQNGNT DERVGRGNHA TSFVPRKSSG RSTALPLDVG  60
TRVHCRWRDG KYHPVKVIER RKVFDGAPTD YEYYVHYTEF NRRLDDWVKL DQLDLGSVEA  120
DVDEKVEEKA TGLKMTRHQK RKIDETHVEG HEELDAASLR EHEEFTKVKN IATIELGRYG  180
IETWYFSPFP PEYNDCVKLY FCEFCLNFMK RKEQLQRHMR KCDLKHPPGD EIYRSGTLSM  240
FEVDGKKNKV YGHNLCYLAK LFLDHKTLYY DVDLFLFYIL CECDDRGCHM VGYFSKEKHS  300
EESYNLACIL TLPPYQRKGY GKFLIAFSYE LSKKEGKVGT PERPLSDLGL LSYRGYWTRV  360
LLEILKKHKS NVAIKGLSDM TAIKSDDILT TLQGLDLIQY RKGQHVICAD PKVLDRHLKA  420
AGRGGLDVDV SKLIWTPYKD QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1151624391280Histone acetyltransferase KAT8
4dnc_B1e-1151624391280Histone acetyltransferase KAT8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated upon UV-B exposure. {ECO:0000269|PubMed:22170978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522879.10.0histone acetyltransferase of the MYST family 1
SwissprotQ9FLF70.0MYST1_ARATH; Histone acetyltransferase of the MYST family 1
TrEMBLA0A0K9PCW30.0A0A0K9PCW3_ZOSMR; Histone acetyltransferase
STRINGGLYMA04G16180.10.0(Glycine max)
Publications ? help Back to Top
  1. Latrasse D, et al.
    The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis.
    BMC Plant Biol., 2008. 8: p. 121
    [PMID:19040736]
  2. Campi M,D'Andrea L,Emiliani J,Casati P
    Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA.
    Plant Physiol., 2012. 158(2): p. 981-95
    [PMID:22170978]
  3. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  4. Xu Y, et al.
    Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes.
    Nucleic Acids Res., 2014. 42(17): p. 10960-74
    [PMID:25183522]
  5. Raevsky AV,Sharifi M,Samofalova DA,Karpov PA,Blume YB
    3D structure prediction of histone acetyltransferase proteins of the MYST family and their interactome in Arabidopsis thaliana.
    J Mol Model, 2016. 22(11): p. 256
    [PMID:27709438]
  6. Fina JP,Masotti F,Rius SP,Crevacuore F,Casati P
    HAC1 and HAF1 Histone Acetyltransferases Have Different Roles in UV-B Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1179
    [PMID:28740501]