PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00280.1
Common NameZOSMA_28G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-X1
Protein Properties Length: 889aa    MW: 99285.6 Da    PI: 8.4804
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.71.6e-05204222120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG H C  lCH+GpCppCp+
  Zosma28g00280.1 204 CG-HECLLLCHPGPCPPCPK 222
                      **.***************96 PP
2zf-NF-X120.69.8e-07256274119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG HkC ++CHeG CppC+
  Zosma28g00280.1 256 CGLHKCPEKCHEGICPPCR 274
                      ******************6 PP
3zf-NF-X117.78.1e-06416435120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C++ C+ G+CppCp+
  Zosma28g00280.1 416 CGRHACKRRCCDGNCPPCPE 435
                      ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.50294161IPR019787Zinc finger, PHD-finger
PROSITE patternPS01359097158IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.50697159IPR001841Zinc finger, RING-type
SMARTSM004380.017204222IPR000967Zinc finger, NF-X1-type
PfamPF014220.0027204221IPR000967Zinc finger, NF-X1-type
CDDcd060082.26E-6246294No hitNo description
SMARTSM004380.0016256275IPR000967Zinc finger, NF-X1-type
PfamPF014227.1E-5256274IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-7299339No hitNo description
SMARTSM004380.0042309328IPR000967Zinc finger, NF-X1-type
PfamPF014220.092309327IPR000967Zinc finger, NF-X1-type
CDDcd060088.37E-8353402No hitNo description
SMARTSM004380.24363383IPR000967Zinc finger, NF-X1-type
PfamPF014221.7363382IPR000967Zinc finger, NF-X1-type
CDDcd060083.77E-8406454No hitNo description
SMARTSM004380.011416435IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031416434IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-10433480No hitNo description
PfamPF014220.017437461IPR000967Zinc finger, NF-X1-type
SMARTSM004380.059443462IPR000967Zinc finger, NF-X1-type
SMARTSM0043864500521IPR000967Zinc finger, NF-X1-type
PfamPF014221.6510520IPR000967Zinc finger, NF-X1-type
SMARTSM004386.3612642IPR000967Zinc finger, NF-X1-type
PfamPF014221.1612622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.2652670IPR000967Zinc finger, NF-X1-type
PfamPF0142212653669IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4715736IPR000967Zinc finger, NF-X1-type
PfamPF014222.3717734IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MPTATSYAAA AGGSRHFPPL KPPLDTITAT VFSESDESSA SGGDSESESQ SQPSSALENS  60
VFSTYLHVSG GGALDADLSK IRSFLAGCSN RGQFSACLIC LERIRISDPV WSCSSGCYVL  120
FHLVCIQSWA QQCSSILPSS SVSSASSSSS NNWHCPKCRL NYAKDLIPRE YLCFCGKVES  180
PPPDPWILPH SCGEICGRSL RGSCGHECLL LCHPGPCPPC PKFVSSQCFC GSTKDVRRCA  240
LKAFSCNKQC CRLSACGLHK CPEKCHEGIC PPCRVKSVYK CLCGRLEEVR ECFEHEFHCE  300
TSCNGILNCG KHPCERGCHP GSCGDCPLKG KRTCPCGKKF YHGMTCDAIV PTCGSTCEKK  360
LSCNLHRCPE RCHRGKCAET CRIIKLKFCR CGSLKKEIPC HQDLSCERKC QRLRDCGRHA  420
CKRRCCDGNC PPCPEICGRK LRCNNHKCPS PCHRGTCSPC PLMVTISCFC GETHFEVPCG  480
VEKDQKPPKC PRPCQVSRLC RHSSVSRKHK CHYGACPPCR MICKEQLSCD HICKQRCHGP  540
VPPANPEFTL KPKKKKKTQW RNENKPGTPC VPCQEIVVKS CLGNHIGGEQ SMLCSDKRRF  600
LCPNLCGNIL QCGNHYCTKD CHVLKQKGVD DLLAQSCEEC LLPCQKEREL TCKHPCSLPC  660
HINDCPPCKM LIKRSCHCGA MVHVFECMYF NSLSDDEQQN VRTCRGPCHR KLLNCPHLCP  720
EICHPGQCPS IDTCNKKVTV RCACQNLKKE WRCQDVQNAY HTNGNNPKDV SKNRFGLGIL  780
PCNSECMVKL KARDSELLLR KTNVVESKVP ANTERFPKRR KKRERVKEEQ PISRFQGIKT  840
FVRRLLMILM ILLILSASMY YGYKGIFRLS DWMNEIENKR PKKSYTRF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793296.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0K9PEL50.0A0A0K9PEL5_ZOSMR; NF-X1-type zinc finger protein NFXL2
STRINGXP_008793296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors