PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00430.1
Common NameZOSMA_28G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 230aa    MW: 25286.1 Da    PI: 9.814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2054103255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+++eeAa a+++a+++l+g
  Zosma28g00430.1  54 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSPEEAAVAYDNAARSLRG 103
                      69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3154111IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2254111IPR016177DNA-binding domain
PROSITE profilePS5103222.5554111IPR001471AP2/ERF domain
PfamPF008472.3E-1254103IPR001471AP2/ERF domain
SMARTSM003804.9E-3854117IPR001471AP2/ERF domain
CDDcd000182.67E-3054110No hitNo description
PRINTSPR003674.0E-105566IPR001471AP2/ERF domain
PRINTSPR003674.0E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKSDLSEGPP LVGRSEMYRA LSSRNLLLRC CHGSSGIKQH SFCWFSEMMV REGHYRGVRK  60
RPWGRYAAEI RDPWKKTRVW LGTFDSPEEA AVAYDNAARS LRGSKARTNF PPPPPPPPLS  120
PPPLSLSLSP SSLFATPLGL FPSATAVTVA KPNPPSLELN LFPPSDSSFG LCFTMPPPPQ  180
RTPSGFVLKD LLGGNEEKSR IRERELPFDL NEPPLPPPPP QTAWSLLFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2154111260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-2154111563ATERF1
3gcc_A8e-2154111563ATERF1
5wx9_A2e-20531111372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279760.15e-39PREDICTED: ethylene-responsive transcription factor 12
RefseqXP_022861036.16e-39ethylene-responsive transcription factor 12-like
TrEMBLA0A0K9PCK61e-161A0A0K9PCK6_ZOSMR; Ethylene-responsive transcription factor 12
STRINGVIT_10s0003g00130.t012e-38(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-33ERF domain protein 12