PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00660.1
Common NameZOSMA_28G00660
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 146aa    MW: 16873 Da    PI: 9.098
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.91e-1071143271
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkke 71 
                       Y ++A + GF+v+k ++k+s  ++   k+t+vCsk+gk++ +        ++++ r+  + rt+Cka   v+++
  Zosma28g00660.1  71 LYYTFAGQKGFTVCKWSTKHS--KQGLRKKTYVCSKHGKSRAKIPVdnlaeKKTKPRHIRNPRTECKALYIVNQN 143
                      79**************99999..3447************99876556676555666677789******9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-871143IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MENFNTLVND GGYDQMSFDT NLVNDQNNLE HMNSPVRDDI DEIPNDRDSH KIIEDPYVGM  60
SFESIKDVEK LYYTFAGQKG FTVCKWSTKH SKQGLRKKTY VCSKHGKSRA KIPVDNLAEK  120
KTKPRHIRNP RTECKALYIV NQNFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PCM41e-105A0A0K9PCM4_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-06FAR1-related sequence 10