PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00770.1
Common NameZOSMA_28G00770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 148aa    MW: 16622 Da    PI: 6.3834
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.71.6e-1541702655
          G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      A+Pk++lelm+v+gLt+e+v+SHLQkYR+
  Zosma28g00770.1 41 DAVPKRVLELMNVPGLTRENVASHLQKYRI 70
                     69***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.17E-93875IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-154075IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-134170IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MKPALQTQFP PDGDGEELHL VVAVININFH AVYLFWACVA DAVPKRVLEL MNVPGLTREN  60
VASHLQKYRI SLKRMMIHDG DPIEATSTSI LQFTAPNLVP PEHPFFASVV SSSSRYLDCW  120
SPFDNTFGFG MIPHQSLASH QYQYQYQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEQ71e-107A0A0K9PEQ7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.15e-15response regulator 1