PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00820.1
Common NameZOSMA_28G00820
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 243aa    MW: 27066.7 Da    PI: 10.4641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19124174255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g++++eIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Zosma28g00820.1 124 QYRGVRRRP-WGKFASEIRDPAKNG--ARVWLGTFETAEDAAMAYDRAAFRMRG 174
                      7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-13124174IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23124184IPR016177DNA-binding domain
SMARTSM003802.0E-39124188IPR001471AP2/ERF domain
PROSITE profilePS5103224.368124182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-33124183IPR001471AP2/ERF domain
CDDcd000181.75E-31124184No hitNo description
PRINTSPR003675.1E-11125136IPR001471AP2/ERF domain
PRINTSPR003675.1E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLLKWTHQVT FISINKDSCV FTNYSESLET TTMPISSIDQ TVATLDSIRR HLLDDTADFP  60
APYDSMVVCD ILNNARARSS RWVPNSLNEN HKMVVKEERE LVATAPPPAA VTEVKKSKVV  120
KAKQYRGVRR RPWGKFASEI RDPAKNGARV WLGTFETAED AAMAYDRAAF RMRGSRAMLN  180
FPNSVGTDSH TVLKSSSSGS GKRASPEPQS SSETENKRKK IESGWNQVPA RTVQFGLGFR  240
RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-36120185166ATERF1
3gcc_A9e-36120185166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114131KKSKVVKAKQYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549934.12e-42ethylene-responsive transcription factor 1A
RefseqXP_028208223.12e-42ethylene-responsive transcription factor 1A-like
TrEMBLA0A0K9PER11e-180A0A0K9PER1_ZOSMR; Ethylene-responsive transcription factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-24ethylene responsive element binding factor 2