PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma290g00160.1
Common NameZOSMA_290G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YA
Protein Properties Length: 243aa    MW: 27968.6 Da    PI: 10.3936
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma290g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA77.42.7e-24131189358
         CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        + VNaKQy++Il+RR +Rak+     ++k +++ +kpy heSRh hA+rR Rg+gGrF
  Zosma290g00160.1 131 SVLVNAKQYHGILRRRRARAKQLIhtsSNKKSITDQKPYKHESRHLHAMRRVRGQGGRF 189
                       578*****************975434477888**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-23127192IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115229.289128192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.1E-19131153IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-21132189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.1E-19166189IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQNTYRGGGY YVGGSGDPSN WLCFLPFRHH CGRGRKEETK TDDVQPFPTF TQLPESMILA  60
KENNIPEKDQ MNKKNKKTVV HFCSSIASPH HHRRRHPLLL SDFPLLDRRY DYKFEKSRQM  120
LPPLNEATGA SVLVNAKQYH GILRRRRARA KQLIHTSSNK KSITDQKPYK HESRHLHAMR  180
RVRGQGGRFL NTKEEKSPSF LETDVGNPNT DDLNDEDEVR GGFTTKWVKS AGGGRYYDLL  240
KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-13132198567NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEL10.0A0A0K9PEL1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.15e-22nuclear factor Y, subunit A7