PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma292g00010.1
Common NameZOSMA_292G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 204aa    MW: 23210.8 Da    PI: 8.5731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma292g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.42.6e-14698390
              FAR1  3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      Y ++A+ +GFsv+  ++k+     + ++ ++++ + Csk+g++      t+ +rr++ ++r++C a++k k+ +  ++w+ ++++ +HnH+++
  Zosma292g00010.1  6 YYDFASVMGFSVCLGSTKNIldkeSAQKIVVMKMLLCSKQGSPILILPPTNGTRRKNGVSRCSCLACIKFKRIDrFDNWVTDSVNFDHNHSFT 98
                      999**********9988765665578888999***********999999999*********************999**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-10699IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTVQSYYDFA SVMGFSVCLG STKNILDKES AQKIVVMKML LCSKQGSPIL ILPPTNGTRR  60
KNGVSRCSCL ACIKFKRIDR FDNWVTDSVN FDHNHSFTPP SKIRYLPINR SISQTSKLLF  120
SSLVEVNVPV SQHAAYFSNQ LGGVQNMGCM TLNINNMVRD DRIDLKNYDV DLIVEEFEIK  180
KLENKDFFYN LVKDDEGHLK YLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PBX91e-149A0A0K9PBX9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-11FAR1-related sequence 5