PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma296g00010.1

Common Name

ZOSMA_296G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 250aa MW: 27769.4 Da PI: 7.3033

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma296g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp LH+rFv+av+ LGG++kAtPk++l++m+ kgLtl+h+kSHLQkYRl Zosma296g00010.1 36 KPRLRWTPALHDRFVDAVTILGGPDKATPKSVLRVMGTKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-31	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.211	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-15	36	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-21	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEDMEIGVSA GSCRSFYSTT GDDNDNSGVM LTRDPKPRLR WTPALHDRFV DAVTILGGPD 60 KATPKSVLRV MGTKGLTLYH LKSHLQKYRL GKQARKDTPE LKGGGEKSSC DDSNSDVLTP 120 DIGIMDKHGL PLTEALRYQI HVQAKLREQL EVQKKLQTRI EVQGKYLQTI LEKAHDSFSF 180 GTMMTVAKVG EKEETTHRRD HGGATVFREM DGEGRADESR LVSLDLNVNN ETFSGFRPCD 240 LQLGLQPHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094706.1	3e-66	myb family transcription factor PHL11-like isoform X2
Swissprot	C0SVS4	1e-54	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0K9PBS6	0.0	A0A0K9PBS6_ZOSMR; Uncharacterized protein
STRING	GSMUA_Achr11P06340_001	2e-64	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-56	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma296g00010.1

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]