PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma296g00110.1
Common NameZOSMA_296G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 257aa    MW: 29222.3 Da    PI: 8.9565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma296g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05137159123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C ++F++   L  H++ H
  Zosma296g00110.1 137 YTCTFCRRVFRSAQALGGHMNIH 159
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.64E-7135164No hitNo description
Gene3DG3DSA:3.30.160.602.6E-4135163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-6136161IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.552137164IPR007087Zinc finger, C2H2
SMARTSM003550.0039137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCPFHCRTDA KTMLTLSFCE HTHNPVFFVY NLVNLLSLFH TIFDICYLIF DIHKVFLLCI  60
YISLISTYSH YAKLRIIYIA YSEQVHHPLI RTQKQMSNHF FWKWREAGQS SSSSSSAGGD  120
DLVGKDSTAW SAVQRTYTCT FCRRVFRSAQ ALGGHMNIHR RERARLQLQQ RSSSIKTTCA  180
SPFFPVLGQP FLSNPVVKGL KLGSHEDHRE PFGVPNPSSE SEGICIQQSS GGKTGSLNNN  240
NNNNVQVLDL ELRLWW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PBT60.0A0A0K9PBT6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-10zinc-finger protein 10