PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma298g00030.1
Common NameZOSMA_298G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 262aa    MW: 29832.5 Da    PI: 8.3257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma298g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.32.6e-1850137590
              FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        YA ++GF+vr+ ++k    +ge++ r+f Csk+g++ +++++   +e+++r+  ++r gC a++ +++++  g w+v ++ ++HnH+++
  Zosma298g00030.1  50 GYAGNIGFNVRMGSTKMY--DGEMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsIGLWRVVNFIEDHNHPMV 137
                       7************98877..9***************998888777777777788899************9999**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1649137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVIGSPLISA QDHIHSEPNT ETIGSSSAPY IPELGQQFNS HDEARDAHMG YAGNIGFNVR  60
MGSTKMYDGE MVGRRFLCSK QGYALSTDTA NNVNERKHRR IRNSRSGCLA MIYISLDRSI  120
GLWRVVNFIE DHNHPMVTPS KRRYLPVNRV ITPLSRALFK SLNTSNISPS DQYCVATQEA  180
GGFDHMQHTP SDLANMRRDD RCNIIQRDAD LLIELFQEKK TKSSDYYYSF TRHDNGNLYS  240
FTYFNFIHNP AQLLLWSNHS M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PE640.0A0A0K9PE64_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-22FAR1-related sequence 5