PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma29g00330.1

Common Name

ZOSMA_29G00330

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 193aa MW: 22826.9 Da PI: 8.5857

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma29g00330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.3	1.7e-20	52	107	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k+ ++t++q+ eLe++F++++ p+ +++ L+kklgL+ +qV +WFqNrR k+k Zosma29g00330.1 52 RKKKPRHTHQQVGELEAFFKECPSPDFNQIISLSKKLGLKMKQVIYWFQNRRSKMK 107 788999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-17	37	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.8E-18	38	107	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.451	49	109	IPR001356	Homeobox domain
SMART	SM00389	8.1E-17	51	113	IPR001356	Homeobox domain
Pfam	PF00046	5.3E-18	52	107	IPR001356	Homeobox domain
CDD	cd00086	1.73E-14	52	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSMKNEAADG DFEGDFFDKE GEYEYDEHEY DEYEYESDSN KRHKVDELST RRKKKPRHTH 60 QQVGELEAFF KECPSPDFNQ IISLSKKLGL KMKQVIYWFQ NRRSKMKVIL GHQENVFLRE 120 KNDRLRYENM LLIEAPKTPM CKNCKKKSID DLRIKNAHLK EQLERVRSLI KKSIDVSSSS 180 FNNFPCDGGF KN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	RRKKKP
2	50	56	RRKKKPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PBM8	1e-140	A0A0K9PBM8_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	1e-35	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma29g00330.1