PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g00120.1
Common NameZOSMA_2G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 709aa    MW: 80002.6 Da    PI: 6.7492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.55.4e-1143307011374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d + + +lL+++++++sp+gd +qRla+yf+++L+ar a+ +s++++++  +  s   +++ l++l+l   +sP+ k+++
  Zosma2g00120.1 330 LRTLLIQCAQSVATDDRRSVGELLKQIRQHSSPEGDGTQRLAHYFANGLEARFAGAGSQTFQSFMETGMS---VATILKSLQLHMAASPFKKMTF 421
                     6789***************************************************999999888777777...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN+aIl+a+e+++r+HiiD++i+ G+QWp+++q L++R +g+p+lRiTg+++p +g   +e++eetg+rL+ +A+++++pfe+   +a +led
  Zosma2g00120.1 422 NFANKAILKAAENATRLHIIDYGIGFGFQWPCFMQRLSERHGGAPMLRITGIDKPLPGfrPAERIEETGRRLEGYAQRFNIPFEYCS-IACKLED 515
                     *******************************************************99999***************************.6899*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL++++gE+l+Vn+++ l++llde+v ++s+rd vL+ +k+++P++++++  + +++++ F++rf eal ++salfd++e+++pre+ er 
  Zosma2g00120.1 516 VRIEELEINKGEVLVVNCMFVLKTLLDETVMVDSPRDIVLRKIKQMNPNIFIHSIINGSYSAPFFVTRFREALFHFSALFDMFESTFPREQPERL 610
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+el+gre+ nv+aceg er +r et+++W  r ++aGF+++pl+++  k +k  +r ++++ + ++++ ++l++gWk+r ++ +S W+
  Zosma2g00120.1 611 CIEKELFGREALNVIACEGIERMQRPETYKQWTVRTRRAGFTQLPLDQESLKGIKKQVRSCYNKDFVIDDDGKWLLQGWKGRIMYGASLWK 701
                     **************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.29304681IPR005202Transcription factor GRAS
PfamPF035141.9E-111330701IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MFTDQEIRQK FDTIVNGFKF EDGMINPQIS ILNPAHPYIV PYQDALNIPN TFSNPTLASN  60
GASSGASSGD DIHEITDFNS DMMLSYISDI LMEEDLDGKF YVHEGDDSAL QAAEKSFSDL  120
LTDSLPHQSP IYSQSFKTPD DSGNGIIDST GTSFSGFDEA SSSRFSIDYN SQSLSDSFRP  180
DLFFANDPVW QFNQGVEESS MLSFNKKRFS KNKFSSKNTM VNIKSERGRS IVEDTGMRGR  240
KHPHRGDQDF ENERSCKHTA VSLDDNSIPP VMFDRVLLCP GGDKCNEAAK QLKKAKENEM  300
SKNMENNVGK GPRGGKTKGR KQTKKEVVDL RTLLIQCAQS VATDDRRSVG ELLKQIRQHS  360
SPEGDGTQRL AHYFANGLEA RFAGAGSQTF QSFMETGMSV ATILKSLQLH MAASPFKKMT  420
FNFANKAILK AAENATRLHI IDYGIGFGFQ WPCFMQRLSE RHGGAPMLRI TGIDKPLPGF  480
RPAERIEETG RRLEGYAQRF NIPFEYCSIA CKLEDVRIEE LEINKGEVLV VNCMFVLKTL  540
LDETVMVDSP RDIVLRKIKQ MNPNIFIHSI INGSYSAPFF VTRFREALFH FSALFDMFES  600
TFPREQPERL CIEKELFGRE ALNVIACEGI ERMQRPETYK QWTVRTRRAG FTQLPLDQES  660
LKGIKKQVRS CYNKDFVIDD DGKWLLQGWK GRIMYGASLW KPADYIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-443117021380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784606.10.0scarecrow-like protein 9
RefseqXP_008784607.10.0scarecrow-like protein 9
RefseqXP_019706347.10.0scarecrow-like protein 9
RefseqXP_019706348.10.0scarecrow-like protein 9
RefseqXP_019706349.10.0scarecrow-like protein 9
RefseqXP_019706350.10.0scarecrow-like protein 9
RefseqXP_019706351.10.0scarecrow-like protein 9
TrEMBLA0A0K9PA930.0A0A0K9PA93_ZOSMR; GRAS family transcription factor containing protein, expressed
STRINGXP_008784606.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-168SCARECROW-like 14