PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01630.1
Common NameZOSMA_2G01630
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 178aa    MW: 20696.4 Da    PI: 6.1266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-1385135255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++++n +Er+RR++iNs++++L++ll ++   ++  ++ a++L  A+  +k+Lq
  Zosma2g01630.1  85 KQKNNVNERKRREKINSRLDQLKQLLLPN---NAYNMDRASMLDAAIAEVKHLQ 135
                     7899*************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1483148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.96783134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-1085139No hitNo description
Gene3DG3DSA:4.10.280.103.6E-1185140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1085135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-989140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MNSQMINEIN NHGSGGLTYS QLLQAPSMDD ISDYLRDLSN ETGIVKNDVN NEEIHSMLRL  60
PPITIEVDEE ETLIQKRKRT RYASKQKNNV NERKRREKIN SRLDQLKQLL LPNNAYNMDR  120
ASMLDAAIAE VKHLQYQVQY FQLFFNIQDH LIQQQLRDKE EGAKEPVVAP VCFYQFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17695RKRTRYASKQKNNVNERKRR
29196ERKRRE
39297RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PB121e-128A0A0K9PB12_ZOSMR; Uncharacterized protein