PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma2g01700.1

Common Name

ZOSMA_2G01700

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 343aa MW: 38402.1 Da PI: 6.1826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma2g01700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.7e-09	244	287	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Zosma2g01700.1 244 IAAKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKATSYVKFLQ 287 5679****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.818	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-10	238	291	No hit	No description
SuperFamily	SSF47459	9.16E-13	238	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-11	239	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-11	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	245	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MALDNFIHTN MFDEHLLGGR DFVSPALFDL MNQTSCEVER SGTVNYSSDP FAQLLPNFHL 60 NSSTSHNRWN ELQLHPCIDS PTILADDHLH QRNSVLSFGG NGCNYPCLRS LTSSSSTSSS 120 MLSFDHLENC RSISNSTRLV PLSYSRPTEN ILDPNTDINS VQLSKEDLIM EEQLRWLYSA 180 ETTNSIDADK VQIRENDDGL LGATLKRPYM AIDDQMQVSK KQCTRGINKI SKQSSSVCKD 240 PQSIAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAT SYVKFLQLQI KVLANDEFWQ 300 ENGGKKPEIG EMKEAIDAIL YSHNGPKSTS TSTTLLGERS KH*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MALDNFIHTN MFDEHLLGGR DFVSPALFDL MNQTSCEVER SGTVNYSSDP FAQLLPNFHL  60
NSSTSHNRWN ELQLHPCIDS PTILADDHLH QRNSVLSFGG NGCNYPCLRS LTSSSSTSSS  120
MLSFDHLENC RSISNSTRLV PLSYSRPTEN ILDPNTDINS VQLSKEDLIM EEQLRWLYSA  180
ETTNSIDADK VQIRENDDGL LGATLKRPYM AIDDQMQVSK KQCTRGINKI SKQSSSVCKD  240
PQSIAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAT SYVKFLQLQI KVLANDEFWQ  300
ENGGKKPEIG EMKEAIDAIL YSHNGPKSTS TSTTLLGERS KH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PB21	0.0	A0A0K9PB21_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-48	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Zosma2g01700.1