PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma2g02150.1

Common Name

ZOSMA_2G02150

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 149aa MW: 18015.5 Da PI: 10.3333

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma2g02150.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	47	100	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++++ +q++ Lee+F+kn +p++++r+eL kkl+++ rq+k+WFqNrRa+ k Zosma2g02150.1 47 KYHRHSLHQIQNLEEVFKKNLHPDQQQRTELGKKLNINSRQIKFWFQNRRAQLK 100 5677899********************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-18	35	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-18	40	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	42	102	IPR001356	Homeobox domain
SMART	SM00389	2.2E-14	44	106	IPR001356	Homeobox domain
CDD	cd00086	9.21E-13	45	102	No hit	No description
Pfam	PF00046	3.2E-16	48	100	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MMNNGSNLNF FDEKENNFSR GDNFFEAKYD SKQNLEDAMS STDKRIKYHR HSLHQIQNLE 60 EVFKKNLHPD QQQRTELGKK LNINSRQIKF WFQNRRAQLK NQLERYENII LKQENIKLRL 120 EQMSLMNAAR RRPCCFKCRY HIVYGKNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564676.1	2e-35	PREDICTED: homeobox-leucine zipper protein ROC5 isoform X1
TrEMBL	A0A0K9PDC4	1e-104	A0A0K9PDC4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	3e-34	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma2g02150.1