PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g02180.1
Common NameZOSMA_2G02180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26906.8 Da    PI: 10.1673
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g02180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-242674149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ien+  rqv fskRr+g++KKA+ELSvLC+ae++v++fs+ gk++ +
  Zosma2g02180.1 26 KKIENEEARQVCFSKRRTGLFKKASELSVLCGAEISVVVFSPAGKVFSF 74
                    68********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-351877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.7541878IPR002100Transcription factor, MADS-box
CDDcd002657.60E-411986No hitNo description
SuperFamilySSF554558.24E-3119101IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-222040IPR002100Transcription factor, MADS-box
PfamPF003195.6E-272774IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-224055IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-225576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIKPGKIEIK KKKKKTSIGR QKIEIKKIEN EEARQVCFSK RRTGLFKKAS ELSVLCGAEI  60
SVVVFSPAGK VFSFGHPSVD SVIDRYVATL NNPTTAAHVN NGTNNISSSN NTGSSHGLNK  120
QYMDVTALLD AERKKKAALE ENSKSIDGWW DVVNNIDTLG MDELQELKKM MEELRCKLLL  180
NRSQHLFRQV RQTANTPISI YNNMFMGGPS GTSSIPVQPN PAVLALPHTN HYGVFDHRTY  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-161886169MEF2C
5f28_B1e-161886169MEF2C
5f28_C1e-161886169MEF2C
5f28_D1e-161886169MEF2C
6byy_A1e-161886169MEF2 CHIMERA
6byy_B1e-161886169MEF2 CHIMERA
6byy_C1e-161886169MEF2 CHIMERA
6byy_D1e-161886169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906925.26e-59agamous-like MADS-box protein AGL62
TrEMBLA0A0K9PAV41e-180A0A0K9PAV4_ZOSMR; Agamous-like MADS-box protein AGL61
STRINGXP_008791999.12e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-29AGAMOUS-like 61