PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma2g02740.1

Common Name

ZOSMA_2G02740

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 177aa MW: 20530.2 Da PI: 9.826

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma2g02740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.2e-14	7	77	24	90
FAR1 24 rngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++e++ r+f Csk+g++ +++++ +e+++r+ ++r gC a++ +++++ + w+v ++ ++HnH+++ Zosma2g02740.1 7 NDHEMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsTRLWRVVNFIEDHNHPMV 77 6788999********998888777777777788899********99899***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-12	7	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGSTKINDHE MVGRRFLCSK QGYALSTDTA NNVNERKHRR IRNSRSGCLA MIYISLDRST 60 RLWRVVNFIE DHNHPMVTPS KRRYLPVNRV ITPLSRALFK SLNTSNISPS DQYCVTAQET 120 GGFDHMQYTP SDLSNMRRDD RCNIIQRDAD LLIELFEEKK NKSSDYFYSF TRHGNM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PAZ9	1e-129	A0A0K9PAZ9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma2g02740.1