PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g03660.1
Common NameZOSMA_2G03660
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 145aa    MW: 16013.2 Da    PI: 9.8724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g03660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-193872135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  Zosma2g03660.1 38 CEICRTTKTPLWRGGPSGPKSLCNACGIKYRKKRR 72
                    99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2293268IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-133287IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-123671No hitNo description
Gene3DG3DSA:3.30.50.102.5E-153772IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-123772No hitNo description
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
PfamPF003203.1E-173872IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDRKDEDKRN QECPEVNSAE ISSSSSSSPS STTDLKSCEI CRTTKTPLWR GGPSGPKSLC  60
NACGIKYRKK RREFLGLNST GGEEKDSSSS GKKENKNVMR LLGFATDLFL QQRSILKLKR  120
RRRLAEEEEA AVLLMALSSG FLYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123LKRRRRL
2118123KRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797400.11e-38GATA transcription factor 15-like
TrEMBLA0A0K9PBJ63e-99A0A0K9PBJ6_ZOSMR; GATA transcription factor 15
STRINGXP_008797400.14e-38(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-19GATA transcription factor 15