PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma302g00100.1
Common NameZOSMA_302G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 102aa    MW: 11493 Da    PI: 4.4206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma302g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS34.23.6e-11869264
              GRAS  2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64
                       + Llec++++++ d  la ++L r++e  s +gdp++R+a+yf++AL + ++++ + ++ + 
  Zosma302g00100.1  8 LRSLLECVRVIDN-DPDLAANYLIRIRESTSDYGDPTERMAFYFAKALYSCVSEHHQLCSTSY 69
                      5789*****7765.999***********************************99444444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.2E-8869IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MQFTPLLLRS LLECVRVIDN DPDLAANYLI RIRESTSDYG DPTERMAFYF AKALYSCVSE  60
HHQLCSTSYN SLTSLLPEEL TLCYKDVNAS CGVNESRIDV F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-13791487GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785667.12e-19SCARECROW-LIKE protein 7-like
RefseqXP_027075560.12e-19SCARECROW-LIKE protein 7-like
RefseqXP_027179320.12e-19SCARECROW-LIKE protein 7
TrEMBLA0A0K9PAH62e-68A0A0K9PAH6_ZOSMR; Uncharacterized protein
STRINGXP_008785667.17e-19(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.14e-15GRAS family protein