PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma303g00010.1
Common NameZOSMA_303G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 93aa    MW: 10383.7 Da    PI: 10.0657
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma303g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.4e-073776142
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                      +fY +Y  ++GFsvrks+++ +  ++e t+rt+v sk+g+++
  Zosma303g00010.1 37 NFYYRYVGRIGFSVRKSTTSFN--SEELTRRTLVYSKQGSSN 76
                      6***************998887..8899***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-43780IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDSSILVNTD VELEPSITSN DHPSIDMSFK TLKDAQNFYY RYVGRIGFSV RKSTTSFNSE  60
ELTRRTLVYS KQGSSNAIIP SSTTSLKKPR KI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PA479e-60A0A0K9PA47_ZOSMR; Uncharacterized protein