PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma305g00040.1

Common Name

ZOSMA_305G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YC

Protein Properties

Length: 203aa MW: 23234.7 Da PI: 4.5986

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma305g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	150.5	3.3e-47	83	179	8	101
NF-YC 8 kq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +q ie++tdfk h+lPlarikki+kadedv+mi+aeaPv++s+ace+fil+ltl++w aeenkrrtl+k+dia a++++d fdfl+d++p Zosma305g00040.1 83 DQtheIENMTDFKTHSLPLARIKKIMKADEDVRMIAAEAPVVFSRACEMFILQLTLQAWAYAEENKRRTLQKNDIAMAISNSDSFDFLIDVIP 175 444559*************************************************************************************** PP NF-YC 98 rdel 101 r++l Zosma305g00040.1 176 REDL 179 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.02E-30	59	170	IPR009072	Histone-fold
Pfam	PF00808	5.9E-22	98	161	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.3E-36	99	176	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MDQNGEDHSY HSDHSIQSDG HNNQNYNTLS PHPPVMVPDE DPSFVDVLSP YSAVVMHQQQ 60 QQQHHVNDVI NYHLYQQDIF FADQTHEIEN MTDFKTHSLP LARIKKIMKA DEDVRMIAAE 120 APVVFSRACE MFILQLTLQA WAYAEENKRR TLQKNDIAMA ISNSDSFDFL IDVIPREDLR 180 EEHSAVGVVG DSLGSNNFYY IQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-49	84	176	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306507.1	6e-58	nuclear transcription factor Y subunit C-2
Refseq	XP_023644735.1	6e-58	nuclear transcription factor Y subunit C-2
Refseq	XP_023644736.1	6e-58	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-57	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A0K9PAB1	1e-149	A0A0K9PAB1_ZOSMR; Nuclear transcription factor Y subunit C-2
STRING	XP_006306507.1	2e-57	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	7e-60	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Zosma305g00040.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]