PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma30g00520.1
Common NameZOSMA_30G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 209aa    MW: 22209.4 Da    PI: 10.1668
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma30g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-1975108134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR gp+g+k+LCnaCG+++rk +
  Zosma30g00520.1  75 CSDCNTTKTPLWRGGPQGPKSLCNACGIRQRKAR 108
                      ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-1469112No hitNo description
PROSITE profilePS5011412.99369105IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-1869121IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-1573109IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-1274106No hitNo description
PfamPF003206.7E-1775108IPR000679Zinc finger, GATA-type
PROSITE patternPS00344075100IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSQLNPPPED AKISASASGS GQWMSSKMRL MRKLRNNTDI FVEPPWSNKK RSVSIASTSA  60
AVAAVDENDN TSRVCSDCNT TKTPLWRGGP QGPKSLCNAC GIRQRKARKA MGVVVAASGV  120
SVMRQKGSLP LSPSPSSTTS SLSSESGEPL QIKTSNMPYK KRCKVLYQGS VEEKMILDDL  180
GIGNLSRNSD VNEAAKLLMA LSSDIICG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9X91e-148A0A0K9P9X9_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-19cytokinin-responsive gata factor 1