PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma30g00560.1
Common NameZOSMA_30G00560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 138aa    MW: 15496.2 Da    PI: 4.7553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma30g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1211.4e-371116254374
             GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                      ++rf+e+l y  ++fd+   +     +e++ + +++l+rei+nv++cega+r+er+e l kWr+r++ aGFk+ +l+++a+kqa++ll  +++d
  Zosma30g00560.1   1 MDRFTESLFYSLTMFDASGGN-----NEQRGLAEVYLQREICNVLCCEGASRTERNEPLTKWRARMSGAGFKTRHLESNAYKQASMLLTLFSGD 89 
                      68***************9988.....5666666777********************************************************** PP

             GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                      gy vee +g l++gW++rpL+s+SaWr
  Zosma30g00560.1  90 GYCVEEIDGYLMFGWHNRPLISASAWR 116
                      **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.72196IPR005202Transcription factor GRAS
PfamPF035144.8E-351116IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDRFTESLFY SLTMFDASGG NNEQRGLAEV YLQREICNVL CCEGASRTER NEPLTKWRAR  60
MSGAGFKTRH LESNAYKQAS MLLTLFSGDG YCVEEIDGYL MFGWHNRPLI SASAWRIRDD  120
VGNSNCSTDE TAQPSQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-171118260381Protein SCARECROW
5b3h_A2e-171118259380Protein SCARECROW
5b3h_D2e-171118259380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925126.16e-53DELLA protein DWARF8
SwissprotQ9ST485e-41DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A0K9P9Y45e-99A0A0K9P9Y4_ZOSMR; Uncharacterized protein
STRINGXP_008809331.11e-50(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-41GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]