PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma310g00040.1

Common Name

ZOSMA_310G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 205aa MW: 22472.7 Da PI: 4.7787

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma310g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.9e-31	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C ++C+l+p++ p++q +++ +v+k+FG++ ++k+++++pe+er+++++sl++eA+ r +Pv+Gavg+++++++ ++ Zosma310g00040.1 2 SCNGCRVLRKGCGEKCILRPCLqwienPDAQGHATVFVAKFFGRAGLMKFISSVPETERPAIFQSLLFEACGRSVNPVNGAVGLLWSGKWSIC 94 6************************9************************************************************* PP DUF260 89 qlkaela 95 q+++e+ Zosma310g00040.1 95 QSAVETI 101 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.136	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-25	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSCNGCRVLR KGCGEKCILR PCLQWIENPD AQGHATVFVA KFFGRAGLMK FISSVPETER 60 PAIFQSLLFE ACGRSVNPVN GAVGLLWSGK WSICQSAVET ILRGGTLQPL TDLHDEMSDA 120 AEIYSQKRVN RNRMSTVDDA VEKTWMVDAF DLDLCLSPTP AYMSAYTRHR GVCLEEEEGE 180 EEGSVTTSSG SGEIVQPMLL NLFI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939132.1	3e-78	LOB domain-containing protein 38
Swissprot	Q9SZE8	9e-68	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0K9P9R6	1e-150	A0A0K9P9R6_ZOSMR; LOB domain-containing protein 39
STRING	XP_008800648.1	2e-77	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	8e-70	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Zosma310g00040.1