PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma311g00010.1

Common Name

ZOSMA_311G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 255aa MW: 28421.8 Da PI: 9.5326

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma311g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.6	2.7e-15	140	232	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr ++++ + ++ +++++ Csk+g+++ t+ +r+++ ++r gC a++k k+ + +++w+ + ++l+HnH+++ Zosma311g00010.1 140 YYDFASSTGFSVRLGSTHNIldkqTGHKILVMKRLLCSKQGSPNLIFPPTNGNRQKNDVSRRGCLASIKFKRIDrSDHWVTHFVNLDHNHSFT 232 999********9998876664244556789********9999999******************999************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-12	140	232	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKESSANMSY GTAKIPNSLN YQFNSPHCQT TVNPIDSSVN VCRSLDPDNV RSNFFDSENV 60 QSPSADIEDS SVQIPAHSDN VRCGTAKTPD NHLKKKFSFT GGYPTSPNNE NGSSGYSQFS 120 KLFPIVGEVF PSYEMTVQSY YDFASSTGFS VRLGSTHNIL DKQTGHKILV MKRLLCSKQG 180 SPNLIFPPTN GNRQKNDVSR RGCLASIKFK RIDRSDHWVT HFVNLDHNHS FTTPTKIRYL 240 LINRSISHTS KILF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256214	1e-94	AC256214.1 Zostera marina clone XTP02-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P9F0	0.0	A0A0K9P9F0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	5e-10	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma311g00010.1