PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma311g00050.1
Common NameZOSMA_311G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family BBR-BPC
Protein Properties Length: 233aa    MW: 25687 Da    PI: 10.3345
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma311g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind245.34.2e-7559232121301
         GAGA_bind 121 dsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl.ngvslDestlPvPv 212
                       +s  + +e++++ +  + +   +++++++ kkr++ +++ +kk+kkkkk     +++ +++sa  + k+ek+++dlv+ +gvs+D s++P+P+
  Zosma311g00050.1  59 PSIPPSTETKNNRNALLGN---DKQTTNQLKKRSSVTNNNKKKKKKKKK-----EEEDDASSATFTGKREKRNLDLVVgEGVSFDFSGVPTPI 143
                       4444433333333333332...222222333233333333333333333.....333344444466899*******87579************ PP

         GAGA_bind 213 CsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       CsCtG++rqCYkWG+GGWqS+CCtttiS yPLP+st r+g+R+agrKmS+ga+ klL +La eG dl  ++DLk+hWA+HGtnkfvtir
  Zosma311g00050.1 144 CSCTGVSRQCYKWGAGGWQSSCCTTTISEYPLPMSTSRPGSRLAGRKMSNGAYGKLLHRLAMEGCDLKDAIDLKNHWARHGTNKFVTIR 232
                       ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.2E-721232IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-6978232IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDAKERVGIR NWDFSSDQEG FLKMNSCNQG KSSSGLPEGS TDRTSTINVA WVPQRNFLPS  60
IPPSTETKNN RNALLGNDKQ TTNQLKKRSS VTNNNKKKKK KKKKEEEDDA SSATFTGKRE  120
KRNLDLVVGE GVSFDFSGVP TPICSCTGVS RQCYKWGAGG WQSSCCTTTI SEYPLPMSTS  180
RPGSRLAGRK MSNGAYGKLL HRLAMEGCDL KDAIDLKNHW ARHGTNKFVT IR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185103KKRSSVTNNNKKKKKKKKK
295103KKKKKKKKK
397103KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120039.12e-69protein BASIC PENTACYSTEINE7
SwissprotO822866e-63BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0K9PBT51e-172A0A0K9PBT5_ZOSMR; Protein BASIC PENTACYSTEINE7
STRINGXP_010261623.12e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2077767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.47e-62basic pentacysteine 7