PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma314g00180.1
Common NameZOSMA_314G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 494aa    MW: 55642.4 Da    PI: 8.0709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma314g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.36.7e-15237329390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++A+++GFsv+  ++k+     + +++++++++ Csk+g++    + t+ +rr++ ++r+gC  ++k k+ + +++w+ ++++l+HnH+++
  Zosma314g00180.1 237 YYDFASSAGFSVCLGSTKNIldkeTGQKNFVMKRLLCSKQGSPILILSLTNGTRRKNGVSRCGCLTSIKFKRIDkSDNWVTDSVNLDHNHPFT 329
                       999**********998876666446677899*************9999999*********************9999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-12237329IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASPTSFDNQ HRPTNLQVSL NINSIFVTPP SYRSQQFTYD HTNTSCNVSL KFHFNSPQCQ  60
TNCNTIPSNV KFSTSLDPDA TASTIFQSKF VQCTFAEIRE SSANMSYGTA KMQNRMNYQF  120
NSPHCQTNVN PINSNGNVSR FLDLDTVRSN FFDSEYVQSA SADIRESSAQ IPADSANLSW  180
GTAKTPDNHF KRKSSSTGEY PTSPNHEIGS SSYSKSNKPC PIVGEFFPSC EMALQSYYDF  240
ASSAGFSVCL GSTKNILDKE TGQKNFVMKR LLCSKQGSPI LILSLTNGTR RKNGVSRCGC  300
LTSIKFKRID KSDNWVTDSV NLDHNHPFTT LSKIRCLLIN RSISHTSKLI FSSLADVNVP  360
VSQQTAYFSN QLGGPQNMSC MTLDINNMVP DDRIDLKNYD VDLIVEEFEL KKSENANFFY  420
DLVKDDEGRL KHLFWADPTM IENYKLFGYS VTFNMTYKTN VYSMVFGMFC SVNYNRKTTI  480
FDSAFLRYYV YSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562140.0AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9L70.0A0A0K9P9L7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-25FAR1-related sequence 5